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Mª Dolores Ramos-Barbero Tomeu Viver Ane Zabaleta Ece Senel María Gomariz Iñaki Antigüedad Fernando Santos Manuel Martínez-García Ramon Rosselló-Móra Josefa Antón 《Environmental microbiology》2021,23(7):3477-3498
Microbial communities in hypersaline underground waters derive from ancient organisms trapped within the evaporitic salt crystals and are part of the poorly known subterranean biosphere. Here, we characterized the viral and prokaryotic assemblages present in the hypersaline springs that dissolve Triassic-Keuper evaporite rocks and feed the Añana Salt Valley (Araba/Alava, Basque Country, Spain). Four underground water samples (around 23% total salinity) with different levels of exposure to the open air were analysed by means of microscopy and metagenomics. Cells and viruses in the spring water had lower concentrations than what are normally found in hypersaline environments and seemed to be mostly inactive. Upon exposure to the open air, there was an increase in activity of both cells and viruses as well as a selection of phylotypes. The underground water was inhabited by a rich community harbouring a diverse set of genes coding for retinal binding proteins. A total of 35 viral contigs from 15 to 104 kb, representing partial or total viral genomes, were assembled and their evolutionary changes through the spring system were followed by SNP analysis and metagenomic island tracking. Overall, both the viral and the prokaryotic assemblages changed quickly upon exposure to the open air conditions. 相似文献
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Sven Wagner Michael Eisenhut Ramon Eritja Franz Oberdorfer 《Nucleosides, nucleotides & nucleic acids》2013,32(7-9):1789-1792
Abstract An efficient procedure for the preparation of oligonucleotides carrying a mono-N-substituted azamacrocycle and its radiolabeled complex with Cu-64 and Tc-99m is reported. The new derivatives are of potential interest for Positron Emission Tomography and Single Photon Emission Tomography. 相似文献
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Anna Castro Carles Codony Ramon Eritja 《Nucleosides, nucleotides & nucleic acids》2013,32(12):2189-2197
Abstract A hybridoma against the nucleoside m6A has been obtained from mouse spleen. This hybridoma was named H65 and it secretes monoclonal antibodies anti-m6A. The competition assays showed that the monoclonal antibody was highly specific for m6A nucleoside. 相似文献
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Anna Maria Aviñó Adrian Mayordomo Ruth Espuny Montse Bach Ramon Eritja 《Nucleosides, nucleotides & nucleic acids》2013,32(7):1613-1617
Abstract The preparation of N2, N2-dimethylguanosine is described. The use of the 2-(p-nitrophenyl)ethyl group instead of the benzyl protecting group for the O6 position of the guanine ring resulted in better yields and shorter protocols. 相似文献
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Beatriz G. de la Torre Anna Maria Aviñó Mónica Escarceller Miriam Royo Fernando Albericio Ramon Eritja 《Nucleosides, nucleotides & nucleic acids》2013,32(9):993-1005
Abstract The preparation of a base-labile (Dnpe) protected derivative of 6-mercaptohexanol is described. The use of the phosphoramidite derivative of this compound improves both yields and the time needed for the preparation of oligonucleotides containing a thiol group at the 5′-end. 相似文献
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Jana Selent Agnieszka A. Kaczor Ramon Guixà-González Pau Carrió Manuel Pastor Cristian Obiol-Pardo 《Journal of molecular modeling》2013,19(4):1507-1514
Survivin, the smallest inhibitor of apoptosis protein (IAP), is a valid target for cancer research. It mediates both the apoptosis pathway and the cell cycle and has been proposed to form a complex with the cyclin-dependent kinase protein CDK4. The resulting complex transports CDK4 from the cytosol to the nucleus, where CDK4 participates in cell division. Survivin has been recognized as a node protein that interacts with several partners; disruption of the formed complexes can lead to new anticancer compounds. We propose a rational model of the survivin/CDK4 complex that fulfills the experimental evidence and that can be used for structure-based design of inhibitors modifying its interface recognition. In particular, the suggested complex involves the alpha helical domain of survivin and resembles the mode of binding of survivin in the survivin/borealin X-ray structure. The proposed model has been obtained by combining protein–protein docking, fractal-based shape complementarity, electrostatics studies and extensive molecular dynamics simulations. Figure
Proposed model of the survivin/CDK4 complex with a close view of the best model refined through molecular dynamics simulations 相似文献
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